Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs370581315 | chr1:91704297 | TCACGCCTGTAATCCCAA/T | 9.27E-6 | 480 | 15.77 | 17.13 | 17.77 | KM Plot |
| THCA | rs370959547 | chr14:59676683 | GA/G | 0 | 480 | 15.83 | 16.23 | 3.53 | KM Plot |
| THCA | rs371202091 | chr11:77962788 | GCTT/G | 2.11E-5 | 487 | 16.4 | 15.48 | 12.92 | KM Plot |
| THCA | rs371657713 | chr10:81627071 | C/G | 9.73E-5 | 473 | 15.67 | 17.03 | 7.43 | KM Plot |
| THCA | rs371673768 | chr9:72052176 | C/A | 7.12E-9 | 477 | 15.5 | 17.03 | 8.87 | KM Plot |
| THCA | rs371965111 | chr19:43583806 | GGTTAAGATCTGAGAGGGA/G | 0.000256 | 484 | 15.32 | 18.93 | 10.08 | KM Plot |
| THCA | rs372096578 | chr10:81638450 | T/A | 1.5E-5 | 471 | 15.2 | 17.85 | 6.03 | KM Plot |
| THCA | rs372592186 | chr6:24466798 | ATTGTT/ATTGTTTTGTT | 0 | 484 | 16.6 | 14.78 | 8.88 | KM Plot |
| THCA | rs372656875 | chr11:62575908 | A/G | 9.01E-5 | 488 | 16.22 | 14 | 14.27 | KM Plot |
| THCA | rs3733082 | chr3:53914093 | G/A | 5.77E-15 | 484 | 16.2 | 16.67 | 10.35 | KM Plot |
| THCA | rs3734467 | chr6:153316326 | A/G | 4.33E-5 | 489 | 15.2 | 17.83 | 10.45 | KM Plot |
| THCA | rs373448624 | chr10:81726912 | C/T | 0.000202 | 486 | 16.22 | 15.83 | 13.5 | KM Plot |
| THCA | rs3734530 | chr6:26195408 | G/C | 2.21E-8 | 490 | 15.63 | 16.8 | 4.75 | KM Plot |
| THCA | rs373755600 | chr11:104900210 | TTAAATATGGAA/T | 1.68E-6 | 489 | 15.9 | 16.4 | 11.47 | KM Plot |
| THCA | rs3737915 | chr1:178891383 | C/T | 0 | 485 | 16.3 | 12.63 | 17.77 | KM Plot |